Produce MCMC trace plot — plot_trace • silverblaze

Produce MCMC trace plot of the log-likelihood at each iteration.

plot_trace(project, K = NULL, rung = NULL, col = "black", phase = "sampling")

Arguments

project	an RgeoProfile project, as produced by the function `rgeoprofile_project()`.
K	which value of K to plot.
rung	which rung to plot. Defaults to the cold chain.
col	colour of the trace.
phase	plot the trace during the burnin or sampling phase

Examples

p <- rgeoprofile_file("tutorial1_project.rds")
plot_trace(project = p, K = 2)
# Similarly, plot the trace for every K value.
plot_trace(project = p)
#> using K = 1 by default