Produce diagnostic plots of log-likelihood

Source: R/plot.R

Produce diagnostic plots of the log-likelihood.

plot_loglike_diagnostic(
  project,
  K = NULL,
  rung = NULL,
  phase = "sampling",
  col = "black"
)

Arguments

project

an RgeoProfile project, as produced by the function rgeoprofile_project().
K

which value of K to plot.
rung

which rung to plot. Defaults to the cold chain.
phase

check the burnin or sampling phase of the MCMC chain
col

colour of the trace.

Details

For a value of K produce the auto-correlation, trace and density plots of the MCMC.

Examples

p <- rgeoprofile_file("tutorial1_project.rds")
plot_loglike_diagnostic(project = p, K = 2)